sjia 24c7f694e6 Handles allele frequencies for any specified population, changed user input for mismatch filter options ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1909 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-25 22:51:56 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Handles allele frequencies for any specified population, changed user input for mismatch filter options	2009-10-25 22:51:56 +00:00
test/org/broadinstitute/sting	intermediate commit for some changes in the Variation system, so Eric can go ahead with his changes. Everything is pretty set, but the Variation interface could use a convenience method that joins all the alternate alleles.	2009-10-23 06:31:15 +00:00