gatk-3.8/public/java
David Roazen 24b72334b3 UnifiedGenotyper now correctly initializes the VariantAnnotator engine.
This allows the annotation classes to perform any necessary initialization/validation.
For example, it allows the SnpEff annotator to (among other things) validate its rod binding.
This will prevent a NullPointerException when SnpEff annotation is requested but no rod binding
is present.

Added an integration test to cover this case so that it doesn't break again.
2011-10-11 12:02:05 -04:00
..
config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src UnifiedGenotyper now correctly initializes the VariantAnnotator engine. 2011-10-11 12:02:05 -04:00
test UnifiedGenotyper now correctly initializes the VariantAnnotator engine. 2011-10-11 12:02:05 -04:00