fromer 248cc308b2 ReadBackedPhasing silently ignores sites with ploidy != 2 ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4272 348d0f76-0448-11de-a6fe-93d51630548a		2010-09-13 21:14:17 +00:00
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alignment	Final step in error refactoring. GATK exception is now ReviewedStingException, indicating that this exception is really what one wants. Only use this exception when you have thought about StingException vs. UserException and made a real decision.	2010-09-12 15:07:38 +00:00
analyzecovariates	All exceptions thrown by the GATK have been reviewed and UserErrors replaced where appropriate. Shazam. Another check-in will remove the GATKException and restore the StingException.	2010-09-10 15:25:30 +00:00
commandline	Improvements to the error display code to print out the SVN number in all messages. Fixes to CallableLoci and tests to check for that case	2010-09-13 18:36:45 +00:00
gatk	Improvements to the error display code to print out the SVN number in all messages. Fixes to CallableLoci and tests to check for that case	2010-09-13 18:36:45 +00:00
oneoffprojects	Final step in error refactoring. GATK exception is now ReviewedStingException, indicating that this exception is really what one wants. Only use this exception when you have thought about StingException vs. UserException and made a real decision.	2010-09-12 15:07:38 +00:00
playground	ReadBackedPhasing silently ignores sites with ploidy != 2	2010-09-13 21:14:17 +00:00
queue	Final step in error refactoring. GATK exception is now ReviewedStingException, indicating that this exception is really what one wants. Only use this exception when you have thought about StingException vs. UserException and made a real decision.	2010-09-12 15:07:38 +00:00
utils	Final step in error refactoring. GATK exception is now ReviewedStingException, indicating that this exception is really what one wants. Only use this exception when you have thought about StingException vs. UserException and made a real decision.	2010-09-12 15:07:38 +00:00