gatk3的最后一个经典版本3.8

fromer 248cc308b2 ReadBackedPhasing silently ignores sites with ploidy != 2 ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4272 348d0f76-0448-11de-a6fe-93d51630548a		2010-09-13 21:14:17 +00:00
R	Removed unused dependency (it was causing a problem by looking for an X11 connection that didn't necessarily exist).	2010-09-09 19:56:00 +00:00
archive	Cleaning up playground utils and tests	2010-08-27 01:25:47 +00:00
c	Reduce file handle usage.	2010-01-05 18:03:01 +00:00
doc	removing the custom reflections library from the libs, and adding a release version. Hopefully this will fix the problem Menachem has been seeing with random JVM crashes. Also	2010-08-19 00:42:37 +00:00
java	ReadBackedPhasing silently ignores sites with ploidy != 2	2010-09-13 21:14:17 +00:00
matlab	Another matlab script -- this time for making power and coverage plots over a specific gene region. Lots of fun file reading, string manipulation, and exploration of the set() function	2009-11-30 20:02:25 +00:00
packages	Fix for DoC issue with multiplexer -- will retire use of multiplexer when	2010-09-07 00:44:07 +00:00
perl	- Update DoC to support output to /dev/null.	2010-09-08 23:43:18 +00:00
python	more useful reports	2010-09-12 14:03:44 +00:00
ruby	accidentally commited an old tool	2010-08-25 15:42:02 +00:00
scala	Fix for Queue	2010-09-12 15:18:08 +00:00
settings	The battle is over. Picard is revved.	2010-09-03 05:28:01 +00:00
shell	continuing improvements to the queueStatus helper script	2010-09-12 14:04:59 +00:00
testdata	and add changes to the vcf used in testing	2010-06-25 02:56:02 +00:00
LICENSE	Adding a license to the root directory in case BOSC checks for one. Has the	2010-04-20 16:04:29 +00:00
build.xml	- Include the fasta index builder in the package.	2010-09-08 20:37:54 +00:00
ivy.xml	Okay, finally done with VCF compression. Now:	2010-08-24 16:36:54 +00:00