gatk3的最后一个经典版本3.8

Mark DePristo 24864fd5b0 GATK now writes BCF output to any file with .bcf extension ... -- Moved VCF and BCF writers to variantcontext.writers -- Updated vcf.jar build path -- Refactored VCFWriter and other code. Now the best (and soon to be only) way to create these files is through a factory method called VariantContextWriterFactory. Renamed the general VCFWriter interface to VariantContextWriter which is implemented by VCFWriter and BCF2Writer.		2012-05-24 10:57:00 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java/src/org/broadinstitute/sting	build system overhaul	2012-05-17 15:16:29 -04:00
public	GATK now writes BCF output to any file with .bcf extension	2012-05-24 10:57:00 -04:00
settings	Rev. tribble to v101 with another putative open file leak fix	2012-05-04 15:40:41 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	build system overhaul	2012-05-17 15:16:29 -04:00
ivy.xml	Not Nexus. Need new name. Navel?	2012-05-24 10:11:58 -04:00