Mauricio Carneiro eb33da6820 Added support to reduce reads to Callable Loci ... -- added calls to representativeCount() of the pileup instead of using ++ -- renamed CallableLoci integration test -- added integration test for reduce read support on callable loci		2013-03-21 15:53:04 -04:00
..
alignment	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
commandline	Fixed the logic of the @Output annotation and its interaction with 'required'.	2013-03-14 11:58:51 -04:00
gatk	Added support to reduce reads to Callable Loci	2013-03-21 15:53:04 -04:00
jna	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
queue	change the default VCFs gatherer of the GATK (not just the UG)	2013-01-18 15:03:12 -05:00
tools	Created ListAnnotations utility (extends CommandLineProgram)	2013-03-20 06:15:27 -04:00
utils	HaplotypeCaller now uses SeqGraph instead of kmer graph to build haplotypes.	2013-03-20 22:54:36 -04:00