gatk3的最后一个经典版本3.8

Mauricio Carneiro 246e085ec9 Unit tests for GATKSAMRecord class ... * new unit tests for the alignment shift properties of reduce reads * moved unit tests from ReadUtils that were actually testing GATKSAMRecord, not any of the ReadUtils to it. * cleaned up ReadUtilsUnitTest		2012-01-26 17:06:36 -05:00
public	Unit tests for GATKSAMRecord class	2012-01-26 17:06:36 -05:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Merged bug fix from Stable into Unstable	2012-01-24 15:19:29 -05:00
ivy.xml	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00