rpoplin 46f3d3e39b Added comments to AnalyzeCovariates and R scripts. R script prevents residuals from going off the edge of the plot. Added skeleton code to the recalibration walkers showing how we plan to handle SOLID reference inserting behavior. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2233 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-02 23:15:52 +00:00
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alignment	Convenience changes. If no -BWT option is specified, pull the BWT location from the reference.	2009-11-23 22:46:05 +00:00
analyzecovariates	Added comments to AnalyzeCovariates and R scripts. R script prevents residuals from going off the edge of the plot. Added skeleton code to the recalibration walkers showing how we plan to handle SOLID reference inserting behavior.	2009-12-02 23:15:52 +00:00
gatk	Added comments to AnalyzeCovariates and R scripts. R script prevents residuals from going off the edge of the plot. Added skeleton code to the recalibration walkers showing how we plan to handle SOLID reference inserting behavior.	2009-12-02 23:15:52 +00:00
oneoffprojects	Moved some more walkers to oneoffprojects and killed an old indel-related walker that isn't being used.	2009-12-02 20:28:07 +00:00
playground	Simple utilities for dealing with Complete Genomics data	2009-12-02 22:51:41 +00:00
utils	Move MSG - plus now obsolete classes which it depends on -- to oneoffprojects (with permission from Jared).	2009-12-02 20:04:22 +00:00