asivache 240eb18564 fix a few related issues when not all the reads were written into the output files. now cleaned output still contains all reads either with modified alignments or untouched ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@444 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-16 03:56:47 +00:00
..
gatk	separate interface for genotypes as opposed to (population) allelic variants	2009-04-16 03:55:16 +00:00
playground	fix a few related issues when not all the reads were written into the output files. now cleaned output still contains all reads either with modified alignments or untouched	2009-04-16 03:56:47 +00:00
utils	Changed interface from contig,pos,length to more common contig,start,stop interface.	2009-04-16 00:04:41 +00:00
StingException.java	We need a base exception so we can differentiate between exceptions we've generated and those external to our code. All our exceptions should extend this exception. I'll migrate the ones I can find later on.	2009-04-07 00:13:45 +00:00