Mauricio Carneiro 23ec5b94cf fixed a missing check for null ... There was a missed check for the case when you don't provide an indels vcf for the cleaner.		2011-08-04 09:50:02 -04:00
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examples	Fixed example unified genotyper pipeline to wrap filter expressions with quotes and use rod binding name "variant" instead of "vcf".	2011-08-03 02:21:01 -04:00
lib	moving the example scala scripts to the qscripts package.	2011-07-01 16:14:59 -04:00
DataProcessingPipeline.scala	fixed a missing check for null	2011-08-04 09:50:02 -04:00
GATKResourcesBundle.scala	* Added the decoy reference to the bundle under the b37 resources.	2011-07-22 14:41:22 -04:00
MethodsDevelopmentCallingPipeline.scala	Making the outputDir optional. Default = ./	2011-07-05 16:30:41 -04:00
RecalibrateBaseQualities.scala	Renaming the plot output directory names.	2011-07-23 12:59:37 -04:00
StandardVariantEvaluation.scala	new home for the core qscripts	2011-06-30 11:32:06 -04:00