gatk3的最后一个经典版本3.8

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Eric Banks 23c9c24adc Various updates to the knowledge base 1. Updated NIST path to its proper place on the file system (and updated the NIST calls to the latest, v2.17). 2. Don't assess genotype concordance for multi-allelic sites because we mess up the GTs when we break them into their component parts (and therefore the GTs look wrong when they really aren't). 3. Add an argument to control the minimum GQ for a GT to be considered called. This improves genotyping accuracy assessments which were unfairly penalizing low confidence GT calls. Delivers PT #59846158.		2013-11-06 14:05:07 -05:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Merge pull request #413 from broadinstitute/rp_qd_and_qual_updates_in_ref_model_pipeline	2013-11-05 06:33:17 -08:00
public	Merge pull request #413 from broadinstitute/rp_qd_and_qual_updates_in_ref_model_pipeline	2013-11-05 06:33:17 -08:00
settings	Modify gatkdoc template to handle downsampling info better	2013-09-26 14:50:32 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	Resolving warnings	2013-09-23 12:42:22 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Changing from scala 2.9.2 to 2.10.2.	2013-09-23 12:42:22 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/