gatk3的最后一个经典版本3.8

Eric Banks 23c6aee236 Added in some basic unit tests for polyploid consensus creation in RR. ... - Uncovered small bug in the fix that I added yesterday, which is now fixed properly. - Uncovered massive general bug: polyploid consensus is totally busted for deletions (because of call to read.getReadBases()[readPos]). - Need to consult Mauricio on what to do here (are we supporting het compression for deletions? (Insertions are definitely not supported)		2013-02-05 10:35:45 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	Added in some basic unit tests for polyploid consensus creation in RR.	2013-02-05 10:35:45 -05:00
public	Resolves Genome Sequence Analysis GSA-750 Don't print an endless series of starting messages from the ProgressMeter	2013-02-04 15:47:30 -05:00
settings	Rev picard, sam-jdk, and tribble	2013-02-01 13:51:30 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Move AWS keys to a resources subdirectory within the phonehome package	2013-01-31 11:56:34 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00