gatk3的最后一个经典版本3.8

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Ron Levine 239151ac7b Do not process a variant if it is too large (> readLength), and log an error remove final keyword before refMap and altMap, constructHaplotype() changes their values return ArtificialHaplotype from constructHaplotype instaed of passing as an argument Add logic so arraycopy does not throw an IndexOutOfBoundsException, add test for a long insert		2014-10-20 15:51:32 -04:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	Do not process a variant if it is too large (> readLength), and log an error	2014-10-20 15:51:32 -04:00
public	Do not process a variant if it is too large (> readLength), and log an error	2014-10-20 15:51:32 -04:00
settings/helpTemplates	Output JSON version of docs for Galaxy	2014-10-09 06:42:25 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Now passing in the path to the GATK directory to tests.	2014-09-02 01:40:59 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/