sjia 235de38c2e Updates to FindClosestAlleleWalker and CreateHaplotypesWalker ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1728 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-25 16:41:58 +00:00
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alignment	Add in weights. Massive performance improvements.	2009-09-24 23:19:15 +00:00
gatk	switched over the FastaAlternateReferenceWalker to the Variation system	2009-09-25 16:09:43 +00:00
playground	Updates to FindClosestAlleleWalker and CreateHaplotypesWalker	2009-09-25 16:41:58 +00:00
secondarybase	Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application.	2009-07-08 18:49:08 +00:00
utils	Cut DeNovoSNPWalker over to the new Variation system, some renaming of methods on the Variation interface, and some corrections on the interface.	2009-09-25 04:35:52 +00:00