Laura Gauthier 2356d5d63f Updated CalculateGenotypePosteriors to compute genotype posteriors using likelihoods from all members of the trio. ... (Right now it only works if all members of the trio are called.) Takes posteriors as input, defaulting to PLs Added annotations for possible de novos for us in full genotype refinement pipeline Added family priors to CGP integration test. Changed CGP to use PP tag instead of GP tag because posteriors are Phred-scaled. Updated CGP integration test md5s to reflect change.		2014-06-18 11:17:15 -04:00
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gatk-package-distribution	If passed -Pgsadev, don't build the distribution package.	2014-06-10 23:33:33 -04:00
gatk-queue-extensions-distribution	Disabled ExampleUG Queue Tests, fixed internal extensions dependency.	2014-05-27 16:16:53 -04:00
gatk-queue-package-distribution	If passed -Pgsadev, don't build the distribution package.	2014-06-10 23:33:33 -04:00
gatk-tools-protected	Updated CalculateGenotypePosteriors to compute genotype posteriors using likelihoods from all members of the trio.	2014-06-18 11:17:15 -04:00
pom.xml	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00