gatk3的最后一个经典版本3.8

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Laura Gauthier 2356d5d63f Updated CalculateGenotypePosteriors to compute genotype posteriors using likelihoods from all members of the trio. (Right now it only works if all members of the trio are called.) Takes posteriors as input, defaulting to PLs Added annotations for possible de novos for us in full genotype refinement pipeline Added family priors to CGP integration test. Changed CGP to use PP tag instead of GP tag because posteriors are Phred-scaled. Updated CGP integration test md5s to reflect change.		2014-06-18 11:17:15 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Updated CalculateGenotypePosteriors to compute genotype posteriors using likelihoods from all members of the trio.	2014-06-18 11:17:15 -04:00
public	Merge pull request #655 from broadinstitute/nfd_mathutil_opts	2014-06-17 17:07:42 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Fixed GATK docs artifact, moved protected ExampleUG tests.	2014-05-22 21:03:55 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/