gatk3的最后一个经典版本3.8

Eric Banks 232afdcbea Added check in the MalformedReadFilter for reads without stored bases (i.e. that use '*'). ... * We now throw a User Error for such reads * User can override this to filter instead with --filter_bases_not_stored * Added appropriate unit test		2013-03-14 17:17:26 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Merge pull request #104 from broadinstitute/eb_fix_output_annotation_GSA-837	2013-03-14 12:52:00 -07:00
public	Added check in the MalformedReadFilter for reads without stored bases (i.e. that use '*').	2013-03-14 17:17:26 -04:00
settings	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00