Eric Banks 2324c5a74f Simplified the interface for simple VCF header lines by making the VCFSimpleHeaderLine not abstract anymore - now any arbitrary header line with an ID (e.g. the contig and ALT lines) can be part of this class without having to define new classes. Also, renamed the 'named' header line to 'id' since that's more accurate.		2012-03-19 21:29:24 -04:00
..
R	GATKReport v1.0	2012-03-12 23:09:19 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Simplified the interface for simple VCF header lines by making the VCFSimpleHeaderLine not abstract anymore - now any arbitrary header line with an ID (e.g. the contig and ALT lines) can be part of this class without having to define new classes. Also, renamed the 'named' header line to 'id' since that's more accurate.	2012-03-19 21:29:24 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Merge branch 'master' of ssh://gsa1.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2012-03-13 09:28:16 -04:00
testdata	adding on-the-fly recalibration test data	2012-03-16 13:18:16 -04:00