gatk3的最后一个经典版本3.8
 
 
 
 
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Mauricio Carneiro 231b8e9f74 Do not output deletion only synthetic reads
If a synthetic read is composed exclusively of deletions, do not output it.
2011-11-15 13:24:43 -05:00
public The DP in the FORMAT field (per sample) must also use the representative count or else it's always 1 for reduced reads. 2011-11-15 10:23:59 -05:00
settings Instead of the SelfScopingFeatureCodec interface, pushed this functionality into Tribble itself. Now we can e.g. determine that a file can be parsed by the BedCodec on the fly. 2011-11-09 15:24:29 -05:00
.gitignore Minor additions to the shared .gitignore file, now that Mark has checked one in. 2011-10-26 12:24:28 -04:00
LICENSE One last test... 2011-06-28 19:18:17 -04:00
build.xml No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path. 2011-10-27 14:17:07 -04:00
ivy.xml Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths. 2011-09-27 14:33:57 -04:00