Mark DePristo aa8afa3899 Merge		2011-09-19 21:16:47 -04:00
..
R	UnitTests for RScript	2011-08-27 10:50:05 -04:00
baq	Removed a public -> private dependency in our test suite.	2011-08-12 17:29:10 -04:00
bed	Fixing broken paths to the testdata directory throughout the codebase.	2011-06-29 17:36:47 -04:00
codecs	Merge	2011-09-19 21:16:47 -04:00
collections	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
fasta	Reduced the number of combinations being tested here, which was overkill	2011-09-01 10:42:43 -04:00
genotype	Darn, forgot to update unit tests.	2011-08-03 12:31:08 -04:00
interval	Final intervals cleanup	2011-09-19 10:19:10 -04:00
pileup	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
report	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
sam	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
text	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
threading	Removed GATK use of distributed parallelism framework.	2011-07-20 16:26:09 -04:00
variantcontext	Fixing up and refactoring usage of indel categories. On a variant context, isInsertion() and isDeletion() are now removed because behavior before was wrong in case of multiallelic sites. Now, methods isSimpleInsertion() and isSimpleDeletion() will return true only if sites are biallelic. For multiallelic sites, isComplex() will return true in all cases.	2011-08-18 16:17:38 -04:00
BaseUtilsUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GenomeLocParserUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GenomeLocSortedSetUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GenomeLocUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
MWUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
MathUtilsUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
PathUtilsUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ReadUtilsUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ReservoirDownsamplerUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
SimpleTimerUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
UtilsUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00