hanna 2309d19f6f Bug fix from Michael Ross: mark second read in sequence as second of pair. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1753 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-01 14:34:36 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Bug fix from Michael Ross: mark second read in sequence as second of pair.	2009-10-01 14:34:36 +00:00
test/org/broadinstitute/sting	Rev'ing Picard, which includes the update to get all the reads in the query region (GSA-173). With it come a bunch of fixes, including retiring the FourBaseRecaller code, and updated md5 for some walker tests.	2009-09-30 20:37:59 +00:00