Mauricio Carneiro 22d2563823 added BWA SW alignment ... The pipeline now accepts fasta/fastq files and aligns them using BWA SW, adds default basequalities, creates read groups and performs BQSR.		2011-08-09 17:05:24 -04:00
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qscript/org/broadinstitute/sting/queue/qscripts	added BWA SW alignment	2011-08-09 17:05:24 -04:00
src/org/broadinstitute/sting/queue	added BWA SW alignment	2011-08-09 17:05:24 -04:00
test/org/broadinstitute/sting/queue	GATKReport v0.2:	2011-08-03 00:24:47 -04:00