rpoplin 22aaf8c5e0 Added the old recalibrator integration tests to the refactored recalibrator sitting in playground. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2096 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-19 22:43:28 +00:00
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alignment	Single alignment generator, another checkpoint. Does generate single alignments, but some of the data still	2009-11-19 21:20:03 +00:00
gatk	Added the old recalibrator integration tests to the refactored recalibrator sitting in playground.	2009-11-19 22:43:28 +00:00
playground	Added the old recalibrator integration tests to the refactored recalibrator sitting in playground.	2009-11-19 22:43:28 +00:00
secondarybase	Rev'ing Picard, which includes the update to get all the reads in the query region (GSA-173). With it come a bunch of fixes, including retiring the FourBaseRecaller code, and updated md5 for some walker tests.	2009-09-30 20:37:59 +00:00
utils	Fixed the sample mix-up bug Kiran discovered, and added a unit test in the VCF reader class (Thanks for the good example files Kiran). Also renamed the toStringRepresentation function to toStringEncoding, and added a matching method in VCFGenotypeRecord.	2009-11-19 18:17:47 +00:00