Mark DePristo 225f3a0ebe Update integration test system to allow us to differentiate between testing data and cpu parallelism		2012-09-05 16:35:00 -04:00
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commandline	- New UserExceptions added for when ReadFilters or Walkers specified on the command line are not found. When -rf xxxx cannot find the class corresponding to xxxx, all read filters are printed in a better formatted way, with links to their gatk docs.	2012-09-04 16:41:44 -04:00
gatk	Done GSA-282: Unindexed traversals crash if a read goes off the end of a contig	2012-09-05 15:45:22 -04:00
jna	Updated hard limit MathUtils.MAXN number of samples from 11,000 to 50,000.	2012-05-29 11:18:22 -04:00
utils	Initial NanoScheduler with input producer thread	2012-09-05 15:45:24 -04:00
BaseTest.java	Extensive unit tests, contacts, and documentation for RecalDatum	2012-07-31 08:11:03 -04:00
MD5DB.java	Finalizing BCF2 mark III commit	2012-06-21 15:16:27 -04:00
MD5Mismatch.java	Final updates to integration tests for BCF2	2012-05-24 10:58:59 -04:00
StingTextReporter.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
WalkerTest.java	Update integration test system to allow us to differentiate between testing data and cpu parallelism	2012-09-05 16:35:00 -04:00