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gatk-3.8/scala/src/org/broadinstitute/sting/queue/engine
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kshakir 542d394e09 Cleaning up Queue debugging output. 
-l DEBUG with local programs now prints out the stdout/stderr of the programs as they are run.
More documentation in the examples with a new even simpler CountReads example.
Took out unused option to build Queue GATK extensions separately.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4025 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-08-13 15:54:08 +00:00
..
DispatchJobRunner.scala Exposed CommandLineFunction defaults to the Queue.jar command line (see -help). 2010-08-11 21:58:26 +00:00
JobRunner.scala Exposed CommandLineFunction defaults to the Queue.jar command line (see -help). 2010-08-11 21:58:26 +00:00
LsfJobRunner.scala Exposed CommandLineFunction defaults to the Queue.jar command line (see -help). 2010-08-11 21:58:26 +00:00
QGraph.scala Cleaning up Queue debugging output. 2010-08-13 15:54:08 +00:00
QNode.scala Changed logging level to default at INFO instead of WARN. 2010-08-09 16:42:48 +00:00
ShellJobRunner.scala Exposed CommandLineFunction defaults to the Queue.jar command line (see -help). 2010-08-11 21:58:26 +00:00