kiran 222c4e5865 Commented out some debugging lines ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@415 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-14 20:15:41 +00:00
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fourbasecaller	Make sure we always write at least 1000 points per base in each cycle's scatterplot. Print the disagreement rate between Bustard and FourBaseRecaller.	2009-04-13 00:49:41 +00:00
gatk	Commented out some debugging lines	2009-04-14 20:15:41 +00:00
illumina	Make output type identical to the bustard parser so the values can be easily swapped for one another.	2009-04-09 20:49:34 +00:00
indels	Transitioned indel code to use GATK and Walkers	2009-04-14 19:14:15 +00:00
samples	Added a sample xml marshaller / unmarshaller.	2009-04-07 22:28:16 +00:00
utils	Commented out a debugging line	2009-04-14 20:15:11 +00:00
ValidateSAM.java	generic declarations added here and there to eliminate a few annoying warnings; no consequential changes	2009-04-02 20:53:01 +00:00