gatk3的最后一个经典版本3.8

depristo 2204be43eb System for traversing duplicate reads, along with a walker to compute quality scores among duplicates and a smarter method to combine quality scores across duplicates -- v1 ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@624 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-07 18:06:02 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
java	System for traversing duplicate reads, along with a walker to compute quality scores among duplicates and a smarter method to combine quality scores across duplicates -- v1	2009-05-07 18:06:02 +00:00
python	Better validation scripts and data	2009-04-29 17:40:07 +00:00
settings	Bumped sam-jdk version to fix bug unzipping bam files.	2009-04-28 20:02:05 +00:00
shell	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
testdata	Better validation scripts and data	2009-04-29 17:40:07 +00:00
build.xml	Added BCEL and some basic instrumenation code to the test library.	2009-05-06 17:18:23 +00:00
ivy.xml	Remove old Apache CLI-based arg system.	2009-05-06 18:37:51 +00:00