Ryan Poplin 21fa5f70ca Merge branch 'master' of ssh://gsa2.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable		2012-10-29 18:53:41 -04:00
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R	Fix a nasty bug in reading GATK reports with a single line	2012-09-10 20:14:13 -04:00
c	…
chainFiles	…
doc	…
java	'Bug' fix: fix the error message from the vcf validator so people realize that the file fails strict validation but still adheres to the spec.	2012-10-29 16:29:27 -04:00
keys	…
packages	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	updating pipeline test md5s	2012-10-29 18:53:27 -04:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00