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Advanced.java
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Usability improvements to GATKDocs
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2011-08-18 21:39:11 -04:00 |
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Argument.java
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Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
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2011-07-17 20:29:58 -04:00 |
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ArgumentCollection.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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ArgumentDefinition.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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ArgumentDefinitionGroup.java
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Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
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2011-07-17 20:29:58 -04:00 |
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ArgumentDefinitions.java
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Fix improper detection of command-line arguments with missing values.
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2011-07-25 13:20:00 -04:00 |
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ArgumentException.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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ArgumentIOType.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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ArgumentMatch.java
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Added ability to specify arguments in files via -args/--arg_file
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2011-10-24 15:58:34 -04:00 |
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ArgumentMatchSite.java
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Added ability to specify arguments in files via -args/--arg_file
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2011-10-24 15:58:34 -04:00 |
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ArgumentMatchSource.java
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Added ability to specify arguments in files via -args/--arg_file
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2011-10-24 15:58:34 -04:00 |
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ArgumentMatchSourceType.java
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Added ability to specify arguments in files via -args/--arg_file
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2011-10-24 15:58:34 -04:00 |
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ArgumentMatches.java
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Added ability to specify arguments in files via -args/--arg_file
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2011-10-24 15:58:34 -04:00 |
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ArgumentSource.java
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ArgumentSource no longer comparable. Arguments sorted by GATKDoclet
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2011-08-18 22:20:14 -04:00 |
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ArgumentTypeDescriptor.java
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Initial working version of new interval system in which the argument for -L (and -XL) is allowed to be a rod file (e.g. VCF). Old samtools-style intervals still behave as before. BTI is no longer supported. The merging (union or intersection) of intervals is now consistently applied to all -L (or -XL) intervals, which is nice. More testing needed.
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2011-10-26 14:11:49 -04:00 |
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ClassType.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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CommandLineProgram.java
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Added ability to specify arguments in files via -args/--arg_file
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2011-10-24 15:58:34 -04:00 |
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CommandLineUtils.java
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Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
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2011-07-17 20:29:58 -04:00 |
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EnumerationArgumentDefault.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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Gather.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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Gatherer.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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Hidden.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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Input.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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IntervalBinding.java
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For some reason, a class of Codecs (including TableCodec) require that a GenomeLocParser be passed in to do the position processing. Why can't they just return a Feature with chr, start, stop? Isn't that the right thing?
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2011-10-27 23:54:28 -04:00 |
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MissingArgumentValueException.java
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Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
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2011-07-17 20:29:58 -04:00 |
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Output.java
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Minor doc fixes
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2011-08-16 12:55:45 -04:00 |
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ParsingEngine.java
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Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable
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2011-10-26 15:44:25 -04:00 |
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ParsingMethod.java
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Added ability to specify arguments in files via -args/--arg_file
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2011-10-24 15:58:34 -04:00 |
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RodBinding.java
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makeUnbound now package protected
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2011-08-10 22:29:32 -04:00 |
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Tags.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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package-info.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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