gatk3的最后一个经典版本3.8

Mauricio Carneiro 21ae3ef5f9 Added downsampling support to ReduceReads ... * Downsampling is now a parameter to the walker with default value of 0 (no downsampling) * Downsampling selects reads at random at the variant region window and strives to achieve uniform coverage if possible around the desired downsampling value. * Added integration test		2012-01-03 09:29:46 -05:00
public	Added downsampling support to ReduceReads	2012-01-03 09:29:46 -05:00
settings	Update Picard to fix a bug Mauricio found in Picard where Picard unnecessarily depends on Snappy during some usages of SortingCollection.	2011-12-29 14:35:02 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Merged bug fix from Stable into Unstable	2011-12-22 10:49:52 -05:00
ivy.xml	Let this one slip through my commits.	2011-12-26 21:55:02 -05:00