kshakir 83e207d9dd Added option to exclude intervals during chunk calling. ... Removed job priority as temp space isn't as tight at the moment and planning on changing the priority interface. Updated chunk calling with ebanks: - Using "the bundle" of resources. - Using dbsnp 132 and 1000G indel RODs for both RTC & IR. - Using the default maxIntervalSize in RTC. - Removed use of UG.exactCalculation argument. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5814 348d0f76-0448-11de-a6fe-93d51630548a		2011-05-18 03:48:02 +00:00
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qscript	Added option to exclude intervals during chunk calling.	2011-05-18 03:48:02 +00:00
src/org/broadinstitute/sting	Corrected memory handling and jobName formatting issues	2011-05-12 17:47:56 +00:00
test/org/broadinstitute/sting/queue	Moved some of the java to scala conversions from production to test code as it's not needed in production and slows down the code.	2011-05-05 04:11:15 +00:00