gatk3的最后一个经典版本3.8

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Karthik Gururaj 217f6948f1 Merge branch 'master' of /home/mozdal/git/hmm into intel_pairhmm Conflicts: PairHMM_JNI/pairhmm-1-base.cc PairHMM_JNI/pairhmm-template-kernel.cc PairHMM_JNI/utils.cc		2014-01-21 12:43:16 -08:00
PairHMM_JNI	Merge branch 'master' of /home/mozdal/git/hmm into intel_pairhmm	2014-01-21 12:43:16 -08:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	1. Inserted #define in sandbox pairhmm-template-main.cc	2014-01-21 09:57:14 -08:00
public	1. Inserted #define in sandbox pairhmm-template-main.cc	2014-01-21 09:57:14 -08:00
settings	Rev'ing the Variant jar to incorporate some patches to the BCF encoder that Menachem needs.	2014-01-02 23:33:17 -05:00
.gitignore	Added support for dynamic selection between AVX and un-vectorized C++,	2014-01-18 11:07:23 -08:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	1. Added support for JNI integration for LoglessCaching PairHMM AVX	2014-01-15 11:07:09 -08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Changing from scala 2.9.2 to 2.10.2.	2013-09-23 12:42:22 -04:00

The Genome Analysis Toolkit