asivache 21729d9311 Do not print debug message when debug mode is not requested!! ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2056 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-16 20:28:41 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Do not print debug message when debug mode is not requested!!	2009-11-16 20:28:41 +00:00
test/org/broadinstitute/sting	Stage 1 of the VariantFiltration refactoring is now complete. There now exists a parallel tool called VariantAnnotator which simply takes variant calls and annotates them with the same type of data that we used to use for filtering (e.g. DoC, allele balance). The output is a VCF with the INFO field appropriately annotated.	2009-11-16 02:41:20 +00:00