kshakir 213cc00abe Refactored argument matching to support other plugins in addition to file lists. ... Added plugin support for sending Queue status messages. Argument parsing can store subclasses of java.io.File, for example RemoteFile.		2012-10-15 15:10:45 -04:00
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R	Fix a nasty bug in reading GATK reports with a single line	2012-09-10 20:14:13 -04:00
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java	Refactored argument matching to support other plugins in addition to file lists.	2012-10-15 15:10:45 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Refactored argument matching to support other plugins in addition to file lists.	2012-10-15 15:10:45 -04:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00