Eric Banks 210db5ec27 Update -maxAlleles argument to -maxAltAlleles to make it more accurate. The hidden GSA production -capMaxAllelesForIndels argument also gets updated.		2012-08-06 11:31:18 -04:00
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alignment	Adding categories for the remaining uncategorized walkers	2012-07-30 11:35:08 -04:00
commandline	GATK Error messages now point to the new website instead of GetSatisfaction.	2012-07-20 17:27:11 -04:00
gatk	Update -maxAlleles argument to -maxAltAlleles to make it more accurate. The hidden GSA production -capMaxAllelesForIndels argument also gets updated.	2012-08-06 11:31:18 -04:00
jna	Device files like /dev/null are now tracked as special by Queue and are not used to generate .out file paths, scattered into a temporary directory, gathered, deleted, etc.	2012-01-23 16:17:04 -05:00
queue	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
utils	Prevent NumberFormatExceptions when parsing the VCF POS field	2012-08-06 11:19:54 -04:00