Eric Banks 20ffbcc86e RR optimization: profiling was showing that the BaseCounts class was a major bottleneck because the underlying implementation was a HashMap. Given that the map index was an indexable Enum anyways, it makes a lot more sense to implement as a native array. Knocks 30% off the runtime in bad regions.		2012-10-17 21:44:53 -04:00
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src/org/broadinstitute/sting	RR optimization: profiling was showing that the BaseCounts class was a major bottleneck because the underlying implementation was a HashMap. Given that the map index was an indexable Enum anyways, it makes a lot more sense to implement as a native array. Knocks 30% off the runtime in bad regions.	2012-10-17 21:44:53 -04:00
test/org/broadinstitute/sting/gatk/walkers	Added AFCalcResultUnitTest	2012-10-16 08:11:06 -04:00