chartl 20f5fdbcf7 Changes to MVC to make the the header of its output VCF compliant with spec (give expected # of values for info field annotations) ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3660 348d0f76-0448-11de-a6fe-93d51630548a		2010-06-28 18:33:23 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org	Changes to MVC to make the the header of its output VCF compliant with spec (give expected # of values for info field annotations)	2010-06-28 18:33:23 +00:00
test/org/broadinstitute/sting	adding the original allele list to a variant context (as the annotation ORIGINAL_ALLELE_LIST), in the case where the set alleles are the result of clipping. Added tests for both cases.	2010-06-28 17:23:46 +00:00