gatk3的最后一个经典版本3.8

chartl 20f5fdbcf7 Changes to MVC to make the the header of its output VCF compliant with spec (give expected # of values for info field annotations) ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3660 348d0f76-0448-11de-a6fe-93d51630548a		2010-06-28 18:33:23 +00:00
R	This replaces tearsheet.r, neatens up graphics, and allows the script to be used in R's interactive environment	2010-06-24 01:02:58 +00:00
archive	Retiring multi-sample genotyper	2010-05-20 14:11:11 +00:00
c	Reduce file handle usage.	2010-01-05 18:03:01 +00:00
doc	moved to wiki	2009-07-22 16:35:23 +00:00
java	Changes to MVC to make the the header of its output VCF compliant with spec (give expected # of values for info field annotations)	2010-06-28 18:33:23 +00:00
matlab	Another matlab script -- this time for making power and coverage plots over a specific gene region. Lots of fun file reading, string manipulation, and exploration of the set() function	2009-11-30 20:02:25 +00:00
packages	Update to the latest rev of the picard sharding patch. Includes updates reflecting	2010-06-06 20:33:21 +00:00
perl	Updates to not depend on an environment variable to figure out where libraries are (helpful for installation at the Sanger).	2010-06-28 15:46:41 +00:00
python	Fixed error message	2010-06-28 14:50:28 +00:00
ruby	Adding the ruby directory, and a simple script to restart Bamboo	2009-12-03 22:48:48 +00:00
scala	Using picard for bam merging.	2010-06-28 17:59:09 +00:00
settings	Rev'ing Tribble with a special version that has excluded VCF 3.3	2010-06-25 18:20:51 +00:00
shell	Refactoring for a first version of scatter gather api with basic shell script implementations.	2010-06-22 18:39:20 +00:00
testdata	and add changes to the vcf used in testing	2010-06-25 02:56:02 +00:00
LICENSE	Adding a license to the root directory in case BOSC checks for one. Has the	2010-04-20 16:04:29 +00:00
build.xml	Refactoring for a first version of scatter gather api with basic shell script implementations.	2010-06-22 18:39:20 +00:00
ivy.xml	Refactoring for a first version of scatter gather api with basic shell script implementations.	2010-06-22 18:39:20 +00:00