aaron cc58a27b00 fix for broken unit test; make sure when we can't get an index off of disk, the internal method returns null ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4040 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-16 13:12:32 +00:00
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alignment	Disabled AlignerIntegrationTest while addressing build machine memory issues.	2010-08-14 01:23:21 +00:00
commandline	The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had	2010-04-20 15:26:32 +00:00
gatk	fix for broken unit test; make sure when we can't get an index off of disk, the internal method returns null	2010-08-16 13:12:32 +00:00
oneoffprojects/walkers	fixing a bug that Eric found with RODs for reads, where some records could be omitted. Sorry Eric!	2010-06-29 21:38:55 +00:00
playground	Exposed CommandLineFunction defaults to the Queue.jar command line (see -help).	2010-08-11 21:58:26 +00:00
utils	Getting rid of GenotypeWriter interface. Of note:	2010-08-13 16:33:22 +00:00
BaseTest.java	Moving pointer to b36 reference from /broad/1KG to /humgen/1kg	2010-08-13 00:54:34 +00:00
WalkerTest.java	fix for feature source in Tribble; we need to check that the record coming back isn't null. Also in the GATK added code to set the default logging level in integration tests to WARN, with the default level change they were spewing a bunch of text.	2010-08-10 02:57:23 +00:00