kshakir 20b38b38f3 Updated from SnakeYAML 1.6 to 1.7. ... Added a pipeline java bean and YAML utility to serialize java beans. Added a getFirehosePipelineYaml.sh that can pull firehose data into the pipeline yaml file format. Updated the fullCallingPipeline.q to begin using the pipeline yaml file format for bams and reference. More changes to come as this code gets tested out in the fullCallingPipeline. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4329 348d0f76-0448-11de-a6fe-93d51630548a		2010-09-22 19:47:49 +00:00
..
qscript	Updated from SnakeYAML 1.6 to 1.7.	2010-09-22 19:47:49 +00:00
src	Fix for Matt: For Mac OS 10.6 temporary directories replace paths like '/var/folders/Ax/AxRUoz51Fh05fVe-j6C1Wk+++TI/-Tmp-/' with '/tmp/' so that google reflections 0.95RC2 still works on classes in the directory.	2010-09-20 22:02:07 +00:00
test/org/broadinstitute/sting/queue/util	Exposed CommandLineFunction defaults to the Queue.jar command line (see -help).	2010-08-11 21:58:26 +00:00