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gatk-3.8/public/scala/src/org/broadinstitute/sting/queue
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Mauricio Carneiro efbfdb64fe Qscript to Downsample and analyze an exome BAM 
this script downsamples an exome BAM several times and makes a coverage distribution
analysis (of bases that pass filters) as well as haplotype caller calls with a NA12878
Knowledge Base assessment with comparison against multi-sample calling
with the UG.

This script was used for the "downsampling the exome" presentation
 		2013-10-10 14:37:33 -04:00
..
engine Resolving warnings 2013-09-23 12:42:22 -04:00
extensions Updated Full Processing Pipeline 2013-08-13 23:35:32 -04:00
function Resolving warnings 2013-09-23 12:42:22 -04:00
library Resolving warnings 2013-09-23 12:42:22 -04:00
util Qscript to Downsample and analyze an exome BAM 2013-10-10 14:37:33 -04:00
QCommandLine.scala Message "script failed" moved to the correct place in the code 2013-02-04 15:37:23 -05:00
QCommandPlugin.scala Updating licenses for all scala files 2013-01-10 17:46:10 -05:00
QException.scala Updating licenses for all scala files 2013-01-10 17:46:10 -05:00
QScript.scala Update QScript.scala 2013-08-02 14:09:26 -04:00
QScriptManager.scala Changing from scala 2.9.2 to 2.10.2. 2013-09-23 12:42:22 -04:00
QSettings.scala Updating licenses for all scala files 2013-01-10 17:46:10 -05:00