gatk3的最后一个经典版本3.8

Mark DePristo 209dd64268 HaplotypeCaller now emits per-sample DP ... -- Created a new annotation DepthPerSampleHC that is by default on in the HaplotypeCaller -- The depth for the HC is the sum of the informative alleles at this site. It's not perfect (as we cannot differentiate between reads that align over the event but aren't informative vs. those that aren't even close) but it's a pretty good proxy and it matches with the AD field (i.e., sum(AD) = DP). -- Update MD5s -- delivers [#48240601]		2013-06-06 09:47:32 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	HaplotypeCaller now emits per-sample DP	2013-06-06 09:47:32 -04:00
public	Bugfix for bad AD values in UG/HC	2013-06-05 17:48:41 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
build.xml	Restore scala compilation by default in build.xml	2013-05-31 11:28:29 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00