Christopher Hartl 20601f034e Updating the checkType() function to include the new StructuralIndel variant type. Fixes outstanding broken integration test.		2012-08-22 07:33:10 -07:00
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alignment	Killing off some FindBugs 'Realiability' issues	2012-08-16 14:00:48 -04:00
commandline	Fixed: GSA-392 @arguments with just a short name get the wrong argument bindings	2012-08-17 11:49:01 -04:00
gatk	Updating the checkType() function to include the new StructuralIndel variant type. Fixes outstanding broken integration test.	2012-08-22 07:33:10 -07:00
jna	Device files like /dev/null are now tracked as special by Queue and are not used to generate .out file paths, scattered into a temporary directory, gathered, deleted, etc.	2012-01-23 16:17:04 -05:00
queue	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
utils	Merge branch 'master' of ssh://gsa2.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2012-08-21 10:21:47 -04:00