kshakir 2058fc12bc Small bug fixes: ... Added a property to allow generating Queue extensions around an external version of the GATK. Updated argument order in -help. Restored the ability to use QScript trait imported annotations in constructors. Removing line feeds from email password files. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5416 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-10 19:54:14 +00:00
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queue	Small bug fixes:	2011-03-10 19:54:14 +00:00
scala	Removed stochasticity from IndelRealigner by random sampling using and seed based on the read list.	2011-01-07 22:03:36 +00:00