Guillermo del Angel 203517fbb7 a) Cleanups/bug fixes to previous commit to CombineVariants. ... b) Change md5 to reflect records that are now merged correctly. c) Change unit merge alleles test to reflect the fact that a null non-variant vc object is not valid and not supported because there's no way to codify such object in a vcf. The code correctly converts this to a non-variant single-base event with whatever the reference is at that location.		2011-09-24 19:08:00 -04:00
..
R	Merge branch 'master' into sgintervals	2011-09-19 09:50:19 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	a) Cleanups/bug fixes to previous commit to CombineVariants.	2011-09-24 19:08:00 -04:00
packages	Fix the AnalayzeCovariates packaging.	2011-09-22 11:55:40 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Updating the MDCP	2011-09-22 11:27:40 -04:00
testdata	Adding bgzip vcf file for unit tests	2011-09-21 15:39:45 -04:00