gatk-3.8/scala/qscript/oneoffs
carneiro 20344a27b4 Quick updates to the data processing pipeline after successfully cleaning the papuans. It now scatter gathers everything and runs in the hour queue for low pass data.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5546 348d0f76-0448-11de-a6fe-93d51630548a
2011-03-31 21:13:33 +00:00
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carneiro Quick updates to the data processing pipeline after successfully cleaning the papuans. It now scatter gathers everything and runs in the hour queue for low pass data. 2011-03-31 21:13:33 +00:00
chartl First pass at recalibrating associations, with optional data whitening. Modification to the TableCodec so it can natively read bedgraph files (just needed to add an extra header marker: "track"). 2011-03-25 19:35:39 +00:00
delangel Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
depristo Bringing script up to date 2011-03-27 20:49:07 +00:00
fromer Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
hanna Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
kshakir Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
rpoplin Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
QTools.q Generalized association is now working. Output is in a horrific format. Implementation of T-testing. Improvements are to look for classes dynamically (a la VariantEval/VariantAnnotator), beautify output, and do optimizations where they exist. 2011-03-01 01:23:37 +00:00