Ami Levy-Moonshine 6590039bc3 add fast gather to UG; change UG to work with log-lessHMM (work in prograss)		2012-12-20 14:58:57 -05:00
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src/org/broadinstitute/sting	add fast gather to UG; change UG to work with log-lessHMM (work in prograss)	2012-12-20 14:58:57 -05:00
test/org/broadinstitute/sting	Related bug fixes to GGA mode in the HC: some variants (especially MNPs) were causing problems because they don't have to start at the current location to match the allele being genotyped. Fixed.	2012-12-10 14:47:04 -05:00