26 lines
1.5 KiB
XML
26 lines
1.5 KiB
XML
<?xml version="1.0" encoding="UTF-8"?>
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<package name="VariantAnnotator">
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<executable name="VariantAnnotator">
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<main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
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<resource-bundle file="StingText.properties" />
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<dependencies>
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<!-- Variant annotator -->
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<class name="org.broadinstitute.sting.gatk.walkers.annotator.VariantAnnotator" />
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<!-- The interfacess -->
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<class name="org.broadinstitute.sting.gatk.walkers.annotator.interfaces.AnnotationType" />
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<class name="org.broadinstitute.sting.gatk.walkers.annotator.interfaces.GenotypeAnnotation" />
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<class name="org.broadinstitute.sting.gatk.walkers.annotator.interfaces.InfoFieldAnnotation" />
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<class name="org.broadinstitute.sting.gatk.walkers.annotator.interfaces.StandardAnnotation" />
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<!-- The annotations -->
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<class name="org.broadinstitute.sting.gatk.walkers.annotator.AlleleBalance" />
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<class name="org.broadinstitute.sting.gatk.walkers.annotator.DepthOfCoverage" />
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<class name="org.broadinstitute.sting.gatk.walkers.annotator.HomopolymerRun" />
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<class name="org.broadinstitute.sting.gatk.walkers.annotator.MappingQualityZero" />
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<class name="org.broadinstitute.sting.gatk.walkers.annotator.QualByDepth" />
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<class name="org.broadinstitute.sting.gatk.walkers.annotator.RMSMappingQuality" />
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<class name="org.broadinstitute.sting.gatk.walkers.annotator.SpanningDeletions" />
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<class name="org.broadinstitute.sting.gatk.walkers.annotator.HaplotypeScore" />
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</dependencies>
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</executable>
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</package>
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