kiran 1fb16d54e0 For SAM files that have no alignments and when no reference is specified, contigInfo.getSequence() is null, causing an error when getSequenceName() is called on the resulting null pointer. Check for null instead and return that instead of barfing here. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@374 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-13 00:48:21 +00:00
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src/org/broadinstitute/sting	For SAM files that have no alignments and when no reference is specified, contigInfo.getSequence() is null, causing an error when getSequenceName() is called on the resulting null pointer. Check for null instead and return that instead of barfing here.	2009-04-13 00:48:21 +00:00
test/org/broadinstitute/sting	Added basic performance testing so I can make sure concurrent access doesn't slow down overall fasta access.	2009-04-12 18:05:56 +00:00