gatk3的最后一个经典版本3.8

Mark DePristo 1fa5050faf Cleanup, unit test, and optimize KBestPaths and Path ... -- Split Path from inner class of KBestPaths -- Use google MinMaxPriorityQueue to track best k paths, a more efficient implementation -- Path now properly typed throughout the code -- Path maintains a on-demand hashset of BaseEdges so that path.containsEdge is fast		2013-03-20 22:54:36 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Cleanup, unit test, and optimize KBestPaths and Path	2013-03-20 22:54:36 -04:00
public	HaplotypeCaller now uses SeqGraph instead of kmer graph to build haplotypes.	2013-03-20 22:54:36 -04:00
settings	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00